e-mail address:

I started studying biology and chemistry at Eötvös Loránd University, Faculty of Science in 1992. After I have decided to be an applied mathematician, I picked up mathematics in 1993. I graduated in 1998 and started a PhD course at the Department of Plant Taxonomy and Ecology

Dissertations

• Enzymatic reaction networks (supervisor: Eörs Szathmáry)
• String processing algorithms (supervisor: Lajos Rónyai)

PhD thesis

• Statistical Sequence Alignment (supervisor János Podani) In pdf format (in Hungarian, sorry): PhD1.pdf, PhD2.pdf, PhD3.pdf, PhD4.pdf, PhD5.pdf,

I've spent 18 months at the Genom Analysis and Bioinformatics group, University of Oxford between 2002 August and 2004 January, and returned twice for 7-9 months between 2007 September and 2009 August. I was a postdoc at the Theoretical Biology and Ecology Modelling Group and a poject leader at the eScience Regional Knowledge Centre.
Now I'm a member of the Bioinformatics group in the Rényi Institute. I was also a work package leader in an EU FP7 project. The project wass in collaboration with ClcBio and other SMEs and RTDs and is about finding transcription factor binding sites in Vertebrate genomes.

• Algorithms in bioinformatics (in Hungarian)
• Stochastic models in bioinformatics (in Hungarian) (in English)
• Monte Carlo methods in biostatistics (in Hungarian)
• The bioinformatics of RNA sequences (in Hungarian)
• Statistics for MSc in biology students (in Hungarian)
• Bioinformatics and Genomics in medical research (in Hungarian)

Some of my best students:

• Timothy Brooks Paige, summer student, 2005.
  Worked on genome rearrangement, published paper: Efficient Sampling of transpositions and inverted transpositions for Bayesian MCMC
• Bence Mélykúti, MSc student, graduated in 2006.
  Thesis: The Mixing Rate of Markov Chain Monte Carlo Methods and some Applications of MCMC Simulation in Bioinformatics
  Published paper:
  The Metropolized Partial Importance Sampling MCMC mixes slowly on minimum reversal rearrangement paths
• Ádám Novák, MSc student, graduated in 2007.
  Thesis : Sampling evolutionary trees and multiple alignments in a Bayesian MCMC framework (in Hungarian)
  Published papers:
  • Stochastic Models of Sequence Evolution including Insertion-Deletion events
  • StatAlign: An Extendable Software Package for Joint Bayesian Estimation of Alignments and Evolutionary Trees.
  • How reliably can we predict the reliability of protein structure predictions?
• Márton Münz, MSc student, graduated in 2007.
  Thesis: Stochastic biclusrtering of DNA chip data (in Hungarian) part1 part2
• Imelda Somodi, PhD student, co-supervised with János Podani, graduated in 2007.
  Working on spatial models in ecology. Published paper: Rearrangement of ecological data matrices via Markov chain Monte Carlo simulation.
• Adrienn Szabó, PhD student, co-supervised with András Benczur, graduated in 2015.
  Working on bioinformatics. Published papers: Reticular Alignment: A progressive corner-cutting method for multiple sequence alignment, Efficient representation of uncertainty in multiple sequence alignments using directed acyclic graphs
• From 2012 till today, I have had several undergraduate research projects at the BSM. The students who published peer-reviewed scientific papers with me so far are:
  • Eliot Bixby, Toby Flint (2012 Fall)
  • Mark Aksen, Kathleen Zhou (2015 Summer)
  • Changshuo Liu (2016 Summer)
  • Aravind Gollakota, William Hardt (2016 Fall)
  • Zhangyang Wei (2017 Summer)
  • Geneva Schlafly, Yuheng (Terry) Wang (2018 Summer)
  • Letong Hong (2019 Summer)
  • Aaron Li, Sohaib Nasir, Varun Srikanth (2020 Summer)
  • Logan Post (2022 Spring)

• Erdős, P.L., Miklós, I., Soukup, L. (2025) Fully graphic degree sequences and P-stable degree sequences, Advances in Applied Mathematics, 163A:102805.
• Miklós, I., Post, L. (2024) Superpolynomial period lengths of the winning positions in the subtraction game. International Journal of Game Theory, https://doi.org/10.1007/s00182-024-00911-5
• Hubai, A., Mezei, T.R., Béres, F., Benczúr, A., Miklós, I. (2024) Constructing and sampling partite, 3-uniform hypergraphs with given degree sequence, PLoS ONE, 19(5): e0303155.
• Erdős, P.L., Mezei, T.R., Miklós, I. (2024) Approximate Sampling of Graphs with Near-P-stable Degree Intervals , Annals of Combinatorics, 28:223-256, https://doi.org/10.1007/s00026-023-00678-8.
• Cibej, U., Li, A., Miklós, I., Nasir, S., Srikanth, V. (2023) Constructing bounded degree graphs with prescribed degree and neighbor degree sequences, Discrete Applied Mathematics, 332:47-61.
• Hong, L., Miklós, I. (2023) A Markov chain on the solution space of edge-colorings of bipartite graphs., Discrete Applied Mathematics, 332:7-22.
• Ecker, A., Bagi, B., Vértes, E., Steinbach-Németh, O., Karlócai, M. R., Papp, O. I., Miklós, I., Hájos, N., Freund, T. F., Gulyás, A. I., Káli, Sz. (2022) Hippocampal sharp wave-ripples and the associated sequence replay emerge from structured synaptic interactions in a network model of area CA3, eLife, 11:e71850.
• Erdős, P.L., Greenhill, C., Mezei, T. R., Miklós, I., Soltész, D., Soukup, L. (2022) The mixing time of the switch Markov chains: a unified approach, Eur. J. Comb., 99:103421.
• Lőrincz, O., Tóth, J., Molnár, L., Miklós, I., Pántya, K., Megyesi, M., Somogyi,E., Csiszovszki, Zs., Tőke, E.R. (2021) In Silico Model Estimates the Clinical Trial Outcome of Cancer Vaccines, Cells, 11(10):3048.
• Erdős, P.L., Győri, E., Mezei, T. R., Miklós, I., Soltész, D. (2021) Half-graphs, other non-stable degree sequences, and the switch Markov chain, Electronic Journal of Combinatorics, 28:3 #P3.7.
• Miklós, I., Schlafly, G., Wang, Y., Wei, Z. (2021) Edge Disjoint Caterpillar Realizations, Discrete Applied Mathematics, 289:327-344.
• Gollakota, A., Hardt, W., Miklós, I. (2020) Packing tree degree sequences Graphs and Combinatorics, 36:779-801.
• Erdős, P.L., Greenhill, C.S., Mezei, T. R., Miklós, I., Soltész, D., Soukup, L. (2019) Mixing time of the swap Markov chain and P-stability. Acta Math. Univ. Comenianae, 88(3):659-665.
• Bérczi, K., Király, Z., Liu, C. Miklós, I. (2019) Packing tree degree sequences. Informatica, 43(1):11-17.
• Miklós, I., Smith, H. (2019) The computational complexity of calculating partition functions of optimal medians with Hamming distance Advances in Applied Mathematics102:18-82.
• Miklós, I. (2019) Computational Complexity of Counting and Sampling, Chapman and Hall/CRC, ISBN 9781138035577 - CAT# K31733
• Gáspári, Z., Mészáros, B., Miklós, I., Simon, I. (2018) Bioinformatika (in Hungarian: Bioinformatics). Chapter 13 in the book Ezerarcú fehérjék (in Hungarian: 1000 faces of proteins), eds: Buday, L., Nyitrai, L. Percel, A. ISBN: 9789633314586, Semmelweis Kiadó
• Erdős, P.L. Mezei, T., Miklós, I., Soltész, D. (2018) Efficiently sampling the realizations of bounded, irregular degree sequences of bipartite and directed graphs. PLoS ONE, 13(8): e0201995.
• Erdős, P.L., Miklós, I. (2018) Not all simple looking degree sequence problems are easy, Journal of Combinatorics, 9(3):553-566.
• Erdős, P.L., Miklós, I., Toroczkai, Z. (2018) New classes of degree sequences with fast mixing swap Markov chain sampling Combinatorics, Probability and Computing, 27(2):186-207.
• Erdős, P.L., Hartke, S.G., van Iersel, L., Miklós, I. (2017) Graph Realizations Constrained by Skeleton Graphs, Electronic Journal of Combinatorics, #P2.47
• Aksen, M. Miklós, I., Zhou, K. (2017) Half-regular factorizations of the complete bipartite graph Discrete Applied Mathematics, 230:21-33.
• Bixby, E, Flint, T, Miklós, I., (2016) Proving the Pressing Game Conjecture on Linear Graphs Involve, 9(1):41-56.
• Miklós, I., Smith, H (2015) Sampling and counting genome rearrangement scenarios, BMC Bioinformatics, 16(Suppl 14): S6.
• Bassler, K.E., Del Genio, C.I., Erdős, P.L., Miklós, I., Toroczkai, Z. (2015) Exact sampling of graphs with prescribed degree correlations New Journal of Physics, 17:083052
• Erdős, P.L., Kiss, S.Z., Miklós, I., Soukup, L. (2015) Approximate Counting of Graphical Realizations PLoS ONE, 10(7): e0131300
• Herman, J.L., Novák, Á., Lyngsoe, R., Szabó, A., Miklós, I., and Hein, J. (2015) Efficient representation of uncertainty in multiple sequence alignments using directed acyclic graphs BMC Bioinformatics, 16:108
• Erdős, P.L, Miklós, I., Toroczkai, Z. (2015) A decomposition based proof for fast mixing of a Markov chain over balanced realizations of a joint degree matrix. SIAM J. Discr. Math. 29, 481-499
• Czabarka, É, Dutle, A, Erdős, P.L., Miklós, I., (2014) On Realizations of a Joint Degree Matrix Discrete Applied Mathematics, 181(30):283-288.
• Miklós, I., Tannier, E., Kiss, Z.S. (2014) On sampling SCJ rearrangement scenarios Theoretical Computer Science, 552:83-98
• Apostolico, A., Erdős, P.L.,Miklós, I., Siemons, J. (2013) Modulated String Searching, Theoretical Computer Science, 525:23-29.
• Erdős, P.L., Király, Z., Miklós, I. (2013) On the swap-distances of different realizations of a graphical degree sequence Combinatorics, Probability and Computing 22(3):366-383.
• Miklós, I., Erdős, P.L., Soukup, L. (2013) Towards random uniform sampling of bipartite graphs with given degree sequence Electronic Journal of Combinatorics 20(1):P16
• Miklós, I., Tannier, E. (2012) Approximating the number of Double Cut-and-Join scenarios, Theoretical Computer Science 439:30-40, doi: 10.1016/j.tcs.2012.03.006
• Miklós, I., Zádori, Z. (2012) Positive Evolutionary Selection of an HD Motif on Alzheimer Precursor Protein Orthologues Suggests a Functional Role PLoS Comp.Biol., 8(2): e1002356.
• Miklós, I. (2011) Sztochasztikus modellek a bioinformatikában (in Hungarian: Stochastic models in bioinformatics), electronic notes.
• Somodi, I., Miklós, I., Virág, K. (2011) A Bayesian MCMC approach to reconstruct spatial vegetation dynamics from sparse vegetation maps. Landscape Ecology, 26(6):805-822.
• Miklós, I. (2010) Introduction to Algorithms in Bioinformatics. Electronic notes.
• Szabó, A., Novák, Á., Miklós, I., Hein, J. (2010) Reticular Alignment: A progressive corner-cutting method for multiple sequence alignment BMC Bioinformatics, 11:570.
• Miklós, I., Tannier, E. (2010) Bayesian Sampling of Genomic Rearrangement Scenarios via Double Cut and Join Bioinformatics, 26: 3012-3019
• Miklós, I. (2010) RNA Structure Prediction. in: David Fenyö (ed.), Compiutational Biology, Methods in Molecular Biology 673:19-36
• Friedman, E., Miklós, I., Hein, J. (2010) MCMC Network: Graphical Interface for Bayesian Analysis of Metabolic Networks ERCIM News, 82:31-32
• Miklós, I., Mélykúti, B., Swenson, K. (2010) The Metropolized Partial Importance Sampling MCMC mixes slowly on minimum reversal rearrangement paths ACM/IEEE Transactions on Computational Biology and Bioinformatics, 4(7):763-767.
• Erdős, P.L., Miklós, I.,, Toroczkai, Z. (2010) A simple Havel-Hakimi type algorithm to realize graphical degree sequences of directed graphs Elec. J. Combinatorics 17(1):R66
• Kim, H., Toroczkai, Z., Erdős, P.L., Miklós, I., Székely, L. (2009) Degree-based graph construction. J. Phys. A., 42(39): 392001.1-392001.10.
• Satija, R., Novák, Á., Miklós, I., Lyngsoe, R., Hein, J. (2009) BigFoot: Bayesian Alignment and Phylogenetic Footprinting with MCMC BMC Evolutionary Biology, 9:217
• Miklós, I., Darling, A. (2009) Efficient sampling of parsimonious inversion histories with application to genome rearrangement in Yersinia Genome Biology and Evolution, 1(1):153-164
• Csürös, M., Miklós, I. (2009) Streamlining and large ancestral genomes in Archaea inferred with a phylogenetic birth-and-death model Mol. Biol. Evol. 26(9):2087-2095
• Miklós, I., Novák, Á., Satija, R., Lyngsoe, R., Hein, J. (2009) Stochastic Models of Sequence Evolution including Insertion-Deletion events Statistical Methods in Medical Research, 18:453-485.
• Novák, Á., Miklós, I., Lyngsoe, R., Hein, J. (2008) StatAlign: An Extendable Software Package for Joint Bayesian Estimation of Alignments and Evolutionary Trees. Bioinformatics, 24(20):2403-2404
• Darling, A., Miklós, I., Ragan, M. (2008) Dynamics of genome rearrangement in bacterial populations. PLoS Genetics, 4(7): e1000128
• Miklós, I., Novák, Á., Dombai, B., Hein, J. (2008) How reliably can we predict the reliability of protein structure predictions? BMC Bioinformatics 9:137.
• Miklós, I. (2008) Statistical multiple alignment chapter in Encyclopedia of Algorithms (ed. M. Kao), New York: Springer, pp. 892-894.
• Meyer, I.M. Miklós, I. (2007) SimulFold: Simultaneously Inferring RNA Structures Including Pseudoknots, Alignments, and Trees Using a Bayesian MCMC Framework PLoS Computational Biology, 3(8):e149.
• Miklós, I. (2007) Algorithms of Bioinformatics chapter in Algorithms of Informatics (ed.: Antal Iványi), pp. 973--1011. Mondat Kiado
• Miklós, I., Paige, T.B., Ligeti, P. (2006) Efficient Sampling of transpositions and inverted transpositions for Bayesian MCMC Proceedings of WABI2006, LNBI 4175: 174-185.
• Csürös, M. & Miklós, I. (2006) A probabilistic model for gene content evolution with duplication, loss, and horizontal transfer Proceedings of RECOMB2006, LNBI 3909:206-220.
• Meyer, I.M. & Miklós, I. (2005) Statistical evidence for conserved, local secondary structure in the coding regions of eukaryotic mRNAs and pre-mRNAs. Nucleic Acids Research, 33(19)6338-6348.
• Miklós, I. &Meyer, I.M. (2005) A linear memory algorithm for Baum-Welch training. BMC Bioinformatics 6:231.
• Csürös, M. & Miklós, I. (2005) Statistical alignment of retropseudogenes and their functional paralogs. Mol. Biol. Evol., 22(12): 2457-2471.
• Csürös, M. & Miklós, I. (2005) Statistical alignment of retropseudogenes and their functional paralogs via a common ancestor. FEBS JOURNAL, 272: 110-110 Suppl. 1.
• Miklós, I. Somodi, I. & Podani, J. (2005) Rearrangement of ecological data matrices via Markov chain Monte Carlo simulation. Ecology, 86(12):3398-3410.
• Lunter, G.A., Miklós, I., Drummond, A., Jensen, J.L., & Hein, J. (2005) Bayesian Coestimation of Phylogeny and Sequence Alignment BMC Bioinformatics, 6:83.
• Podani, J., Csontos, P., Tamás, J. & Miklós, I. (2005) A new multivariate approach to studying temporal changes of vegetation. Plant Ecology, 181:1-16.
• Miklós, I., Ittzés, P. & Hein, J. (2005) ParIS Genome Rearrangement Server Bioinformatics, 21(6):817-820.
• Miklós, I. & Hein, J. (2005) Genome rearrangement in mitochondria and its computational biology Lecture Notes in Bioinformatics 3388:85-96.
• Miklós, I., Meyer, I.M. & Nagy, B. (2005) Moments of the Boltzmann distribution for RNA secondary structures Bul. Math. Biol., 67(5):1031-1047.
• Meyer, I.M. & Miklós, I. (2004) Co-transcriptional folding is encoded within RNA genes. BMC Molecular Biology, 5:10
• Miklós, I. (2004) Bioinformatikai algoritmusok(Algorithms in bioinformatics, in Hungarian) In: Informatikai algoritmusok (Algorithms of Computer Science), (ed.: Antal Iványi), Eötvös Kiadó Budapest. pp. 538-579.
• Lunter, G.A., Drummond, A., Miklós, I., & Hein, J. (2004) Statistical aligment: recent progress, new applications and challenges In: Nielsen, R. (ed): Statistical methods in molecular evolution Springer-Verlag, New-York, in press.
• Miklós, I., Lunter, G. A. & Holmes, I. (2004) A 'long indel' model for evolutionary sequence alignment. Mol. Biol. Evol., 21(3):529-540.
• Miklós, I. & Podani, J. (2004) Randomization of presence/absence matrices: comments and new algorithms Ecology, 85:86-92.
• Lunter G.A., Miklós, I. , Song, Y.S. & Hein, J. (2003) An efficient algorithm for statistical multiple alignment on arbitrary phylogenetic trees J. Comp. Biol. 10(6):869-889.
• Miklós, I. (2003) MCMC Genome Rearrangement Bioinformatics, special issue for ECCB2003 19(Suppl.2):ii130-ii137.
• Lunter, G.A., Miklós, I., Drummond, A., Jensen, J.L., & Hein, J. (2003) Bayesian phylogenetic inference under a statistical indel model, ps pdf Lecture Notes in Bioinformatics, Proceedings of WABI'03, 2812:228-244.
• Miklós, I. (2003) Algorithm for statistical alignment of sequences derived from a Poisson sequence length distribution. Disc. Appl. Math. 127(1):79-84.
• Podani, J. & Miklós, I. (2002) Resemblance coefficients and the horseshoe effect in principal coordinates analysis. Ecology, 84(12):3331-3343.
• Miklós, I. (2002) An improved algorithm for statistical alignment of sequences related by a star tree. Bul Math. Biol. 64(4):771-779.
• Miklós, I. & Toroczkai, Z. (2001) An improved model for statistical alignment, in: WABI2001, Lecture Notes in Computer Science, (O.Gascuel & B.M.E.Moret, eds.) 2149:1-10. Springer, Berlin
• Pál C. & Miklós, I.(1999) Epigenetic inheritance, genetic assimilation and speciation. J. theor. Biol. 200:19-37.

• Miklós, I. (2007) Computational challanges in multiple genome rearrangement MCMC 5th Bertinoro Computational Biology workshop, 12-17 May, 2007. Bertinoro, Italy
  http://www.mcb.mcgill.ca/research/bertinoro/
• Miklós, I., Paige, T.B., Ligeti, P. (2006) Efficient Sampling of transpositions and inverted transpositions for Bayesian MCMC 6th Workshop on Algorithms in Bioinformatics, September 11/13, 2006. Zürich, Switzerland
  http://algo06.inf.ethz.ch/wabi
• Csürös, M. Miklós, I. (2006) A Probabilistic Model for Gene Content Evolution with Duplication, Loss, and Horizontal Transfer. RECOMB 2006, April 2-5, 2006. Venice Convention at The Cinema Palace, Venice Lido - Italy
  http://recomb06.dei.unipd.it/
• Miklós, I., Somodi, I. & Podani, J. (2005) Ökológiai adatmátrixok átrendezése Markov Lánc Monte Carlo szimuláció segítségével (In Hungarian: Rearranging ecological data matrices using MCMC)
  VII. Magyar Biometriai és Biomatematikai Konferencia 2005. July 5-6., Budapest
• Miklós, I. (2005) Fast algorithm for calculating the likelihood of a tree in a gene gain-loss-duplication model
  SBC-WCN workshop on protein structure/function prediction and comparative genomics 2005. May 28-29, Stockholm, Sweden
  http://www.sbc.su.se/seminars/sbc_wcn_05/
• Miklós, I., Somodi, I. & Podani, J. (2004) Új statisztikai módszer hasonlósági hálózatok felderítésére cönológiai adatmátrixok alapján (In Hungarian, New statistical methods for inferring similarity networks from ecological data matrices)
  Szegedi Ökológiai Napok, 2004. Nov. 25-26.
• Miklós, I. & Hein, J. (2004) Genome rearrangement in mitochondria and its computational biology. 2nd RECOMB Comparative Genomics Satellite Workshop, 2004. Oct. 16-19. Bertinoro, Italy
  http://www.nada.kth.se/~jensl/recombcg2004.html
• Miklós, I. (2004) Two applications of Metropolised partial importance sampler in bioinformatics, Karlsruher Stochastik-Tage 2004. Mar. 23-26, Germany
  http://www.stoch2004.uni-karlsruhe.de/stoch2004/index_en.html
• Miklós, I. (2003) MCMC Genome rearrangement, 2^nd European Conference on Computational Biology 2003. Sep. 27-30, Paris, France.
  http://www.inra.fr/eccb2003/
• Lunter, G.A., Miklós, I., Drummond, A., Jensen, J.L.,& Hein, J. (2003) Bayesian phylogenetic inference under a statistical indel model, 3^rd Workshop on Algorithms in Bioinformatics, 2003 Sep. 15-20, Budapest, Hungary
  http://www.conferences.hu/ALGO2003/algo_2003.htm
• Miklós, I. & Toroczkai, Z. (2001) An improved model for statistical alignment, 1^st Worksop on Algorithms in Bioinformatics 2001. Aug. 28-31, Aarhus, Denmark.
  http://www.brics.dk/wabi2001/index.html
• Miklós, I. (2001b) An improved algorithm for statistical alignment of sequences evolved by a star tree. Phylogenetics Combinatorics, 2001. Jun. 10-16, Bielefeld Germany
  http://www.mathematik.uni-bielefeld.de/~fspm_gk/Veranstaltungen/Workshops/Abstracts/phylogenetics1.html
• Miklós, I. (2001a) Irreversible likelihood models. European Mathematical Genetics Meeting, 2001. Apr. 20-21, Lille, France.

• Münz, M. Mikl&oacuta;s, I (2006) Finding biclusters in microarray data with Bayesian Markov chain Monte Carlo BCII2006, 2006, October 8-12, Budapest, Hungary, http://www.diamond-congress.hu/bcii2006/
• Paige, T.B.,Miklós, I. (2006) Efficient Sampling of transpositions and inverted transpositions for Bayesian MCMC
  RECOMB 2006, April 2-5, 2006. Venice Convention at The Cinema Palace, Venice Lido - Italy
  http://recomb06.dei.unipd.it/
• Novák, Á., Miklós, I. (2006) Structure Projector: protein structure prediction from Bayesian distribution of multiple alignments.
  RECOMB 2006, April 2-5, 2006. Venice Convention at The Cinema Palace, Venice Lido - Italy
  http://recomb06.dei.unipd.it/
• Lunter, G.A., Miklós, I., Csürös, M. (2006) ReticularAlignment: a new heuristic for multiple sequence alignment using transducers and suboptimal alignments.
  RECOMB 2006, April 2-5, 2006. Venice Convention at The Cinema Palace, Venice Lido - Italy
  http://recomb06.dei.unipd.it/
• Csürös, M., Miklós, I. (2005) Statistical alignment of retropseudogenes and their functional paralogs via a common ancestor, 30^th FEBS Congress, 2005 Jul. 2-7, Budapest, Hungary
  http://www.febs-iubmb-2005.com/
• Miklós, I.,, Drummond, A., Lunter, G.A., Hein, J. (2003) Cosamling alignments and evolutionary trees in a Bayesian framework. 3^rd Workshop on Algorithms in Bioinformatics, 2003 Sep. 15-20, Budapest, Hungary
  http://www.conferences.hu/ALGO2003/algo_2003.htm
• Podani, J., & Miklós, I. (2002) On the horseshoe effect in ecological ordinations. 45^th Symposium of the International Association for Vegetation Science, March 3-8, 2002, Porto Alegre, Brazil
• Podani, J., & Miklós, I. (2001) Resemblance coefficients and the horseshoe effect in principal co-ordinates analysis. AbuDiv2001, August 28-September 2, 2001, Balatonfüred, Hungary
• Szathmáry E.,Miklós, I. (1999) Epistasis of deleterious mutations affecting biochemical networks. NATO Advanced Research Workshop on Technological and Medical Implications of Metabolic Control Analysis, April 10-16, 1999, Visegrád, Hungary
  http://bip.cnrs-mrs.fr/bip10/meet99.htm

• Random walk on random walks Mathematical Genetics Seminar, 2006 Dec 5, OCGF, Oxford, UK
• Genomátrendeződések Rényi Intézet, 2006 március 13.
• Genomátrendeződés és genom architektúra humán tumor genomokban (Genome rearrangement and genome architecture in human tumor genomes, in Hungarian)
  Bioinformatika konferencia, 2005 május 21-22, Balatonfüred
• Can we distinguish RNA genes from random sequences?
  Collegium Budapest, 2004-11-24
• Összehasonlító bioinformatika (Comparative bioinformatics, in Hungarian) Bioinformatics seminar, Renyi Institute 2004 October 1.
  http://www.renyi.hu/~bioinf/
• MCMC methods for inferring genome rearrangement
  Mathematical Genetics seminar, 20 January 2004, OCGF, Oxford
• Algorithmic challenges in MCMC.
  Oxford-BiRC meeting, 2003 June 24-26, Sandbjerg, Denmark
• Trees sequences and the molecular evolution
  Fellow seminar, 30 May 2002, Collegium Budapest